Skip to main content
NSF NEON, Operated by Battelle

Main navigation

  • About
    • NEON Overview
      • Vision and Management
      • Spatial and Temporal Design
      • History
    • About the NEON Biorepository
      • ASU Biorepository Staff
      • Contact the NEON Biorepository
    • Observatory Blog
    • Newsletters
    • Staff
    • FAQ
    • Contact Us

    About

  • Data
    • Data Portal
      • Data Availability Charts
      • API & GraphQL
      • Prototype Data
      • Externally Hosted Data
    • Data Collection Methods
      • Airborne Observation Platform (AOP)
      • Instrument System (IS)
        • Instrumented Collection Types
        • Aquatic Instrument System (AIS)
        • Terrestrial Instrument System (TIS)
      • Observational System (OS)
        • Observation Types
        • Observational Sampling Design
        • Sampling Schedules
        • Taxonomic Lists Used by Field Staff
        • Optimizing the Observational Sampling Designs
      • Protocols & Standardized Methods
    • Getting Started with NEON Data
      • neonUtilities for R and Python
      • Learning Hub
      • Code Hub
    • Using Data
      • Data Formats and Conventions
      • Released, Provisional, and Revised Data
      • Data Product Bundles
      • Usage Policies
      • Acknowledging and Citing NEON
      • Publishing Research Outputs
    • Data Notifications
    • NEON Data Management
      • Data Availability
      • Data Processing
      • Data Quality

    Data

  • Samples & Specimens
    • Biorepository Sample Portal at ASU
    • About Samples
      • Sample Types
      • Sample Repositories
      • Megapit and Distributed Initial Characterization Soil Archives
    • Finding and Accessing Sample Data
      • Species Checklists
      • Sample Explorer - Relationships and Data
      • Biorepository API
    • Requesting and Using Samples
      • Loans & Archival Requests
      • Usage Policies

    Samples & Specimens

  • Field Sites
    • Field Site Map and Info
    • Spatial Layers & Printable Maps

    Field Sites

  • Resources
    • Getting Started with NEON Data
    • Research Support Services
      • Field Site Coordination
      • Letters of Support
      • Mobile Deployment Platforms
      • Permits and Permissions
      • AOP Flight Campaigns
      • Research Support FAQs
      • Research Support Projects
    • Code Hub
      • neonUtilities for R and Python
      • Code Resources Guidelines
      • Code Resources Submission
      • NEON's GitHub Organization Homepage
    • Learning Hub
      • Tutorials
      • Workshops & Courses
      • Science Videos
      • Teaching Modules
    • Science Seminars and Data Skills Webinars
    • Document Library
    • Funding Opportunities

    Resources

  • Impact
    • Research Highlights
    • Papers & Publications
    • NEON in the News

    Impact

  • Get Involved
    • Upcoming Events
    • Research and Collaborations
      • Environmental Data Science Innovation and Inclusion Lab
      • Collaboration with DOE BER User Facilities and Programs
      • EFI-NEON Ecological Forecasting Challenge
      • NEON Great Lakes User Group
      • NCAR-NEON-Community Collaborations
    • Advisory Groups
      • Science, Technology & Education Advisory Committee
      • Technical Working Groups
    • NEON Ambassador Program
      • Exploring NEON-Derived Data Products Workshop Series
    • Partnerships
    • Community Engagement
    • Work Opportunities

    Get Involved

  • My Account
  • Search

Search

Learning Hub

  • Tutorials
  • Workshops & Courses
  • Science Videos
  • Teaching Modules

Breadcrumb

  1. Resources
  2. Learning Hub
  3. Workshops & Courses
  4. Using NEON’s eddy4R eddy-covariance software and data products | AGU 2017

Workshop

Using NEON’s eddy4R eddy-covariance software and data products | AGU 2017

American Geophysical Union Annual Meeting

December 12, 2017

Share

This workshop further explores the open-source “eddy4R” packages in the R language for eddy-covariance statistical computing. eddy4R intends to provide raw-data processing capabilities that complement existing high-level functionalities of, for example, the “REddyProc” R package. Together they are wrapped into a reproducible, shareable and extensible eddy-covariance processing environment based on Docker containerization technology.

Workshop motivation and purpose

  • To bring together eddy-covariance (EC) software and data product developers, users and technical working group members both internal and external to the National Ecological Observatory Network (NEON).
  • To provide a tutorial for (prospective) eddy4R users on how to interact with NEON EC data and software.
  • To provide community-feedback from (prospective) eddy4R users to eddy4R developers for incorporation into data-generating NEON code.

Registration

Please see the workshop event page for more information. 

Before attending the workshop, please read about the eddy4R package:

Metzger, S., Durden, D., Sturtevant, C., Luo, H., Pingintha-Durden, N., Sachs, T., Serafimovich, A., Hartmann, J., Li, J., Xu, K., and Desai, A. R.: eddy4R 0.2.0: a DevOps model for community-extensible processing and analysis of eddy-covariance data based on R, Git, Docker, and HDF5, Geosci. Model Dev., 10, 3189-3206, doi:10.5194/gmd-10-3189-2017, 2017.

Schedule

Location: Gardenia Room, Hilton Garden Inn

Date: 19:00-22:00 CST 2017-12-12

Time Topic
18:30 Help desk and room set up
19:00 Welcome & Introductions
19:15 Overview of eddy4R community software model
19:30 Lightning talks: community use and applications of interest
20:15 Break
20:30 Breakout Groups
Tutorial: Interactive (basic) eddy4R
Discussion/brainstorming: Scaled, reproducible application of eddy4R
Discussion/demo: Advanced processing capabilities of eddy4R
21:15 Breakout summary, next steps, and debrief

Instructors

  • Stefan Metzger - National Ecological Observatory Network
  • Ankur Desai - University of Wisconsin-Madison
  • David Durden - National Ecological Observatory Network
  • Natchaya Pingintha-Durden - National Ecological Observatory Network
  • Cove Sturtevant- National Ecological Observatory Network
  • Ke Xu - University of Wisconsin-Madison

If you have questions about the workshop materials, please contact one of the instructors.

| Time | Topic | Lead | |-------------|---------------| | 18:30 | Help desk and room set up| | | 19:00 | Welcome & Introductions| Stefan, Ankur | | 19:15 | Overview of eddy4R community software model| Stefan | | 19:30 | Lightning talks: community use and applications of interest| | | | NOX Fluxes | Adam R. Vaughan | | | Scaled End-to-end Data Processing | Tarek El-Madany | | | Insights from alternative flux processing approaches | Anne Griebel | | 20:15 | Break| | | 20:30 | Breakout Groups| | | | Tutorial: Interactive (basic) eddy4R| Dave, Natchaya | | | Discussion/brainstorming: Scaled, reproducible application of eddy4R| Cove, Ankur | | | Discussion/demo: Advanced processing capabilities of eddy4R| Ke, Stefan | | 21:15 | Breakout summary, next steps, and debrief | Ankur, Stefan |

Workshop Notes

[[nid:6577]]

Presentations

[[nid:6730]] [[nid:6582]] [[nid:6583]] [[nid:6584]]

Share

NSF NEON, Operated by Battelle

Follow Us:

Join Our Newsletter

Get updates on events, opportunities, and how NEON is being used today.

Subscribe Now

Footer

  • About Us
  • Contact Us
  • Terms & Conditions
  • Careers
  • Code of Conduct

Copyright © Battelle, 2026

The National Ecological Observatory Network is a major facility fully funded by the U.S. National Science Foundation.

Any opinions, findings and conclusions or recommendations expressed in this material do not necessarily reflect the views of the U.S. National Science Foundation.