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  4. Using NEON’s eddy4R eddy-covariance software and data products | AGU 2017

Workshop

Using NEON’s eddy4R eddy-covariance software and data products | AGU 2017

American Geophysical Union Annual Meeting

December 12, 2017

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This workshop further explores the open-source “eddy4R” packages in the R language for eddy-covariance statistical computing. eddy4R intends to provide raw-data processing capabilities that complement existing high-level functionalities of, for example, the “REddyProc” R package. Together they are wrapped into a reproducible, shareable and extensible eddy-covariance processing environment based on Docker containerization technology.

Workshop motivation and purpose

  • To bring together eddy-covariance (EC) software and data product developers, users and technical working group members both internal and external to the National Ecological Observatory Network (NEON).
  • To provide a tutorial for (prospective) eddy4R users on how to interact with NEON EC data and software.
  • To provide community-feedback from (prospective) eddy4R users to eddy4R developers for incorporation into data-generating NEON code.

Registration

Please see the workshop event page for more information. 

Before attending the workshop, please read about the eddy4R package:

Metzger, S., Durden, D., Sturtevant, C., Luo, H., Pingintha-Durden, N., Sachs, T., Serafimovich, A., Hartmann, J., Li, J., Xu, K., and Desai, A. R.: eddy4R 0.2.0: a DevOps model for community-extensible processing and analysis of eddy-covariance data based on R, Git, Docker, and HDF5, Geosci. Model Dev., 10, 3189-3206, doi:10.5194/gmd-10-3189-2017, 2017.

Schedule

Location: Gardenia Room, Hilton Garden Inn

Date: 19:00-22:00 CST 2017-12-12

Time Topic
18:30 Help desk and room set up
19:00 Welcome & Introductions
19:15 Overview of eddy4R community software model
19:30 Lightning talks: community use and applications of interest
20:15 Break
20:30 Breakout Groups
Tutorial: Interactive (basic) eddy4R
Discussion/brainstorming: Scaled, reproducible application of eddy4R
Discussion/demo: Advanced processing capabilities of eddy4R
21:15 Breakout summary, next steps, and debrief

Instructors

  • Stefan Metzger - National Ecological Observatory Network
  • Ankur Desai - University of Wisconsin-Madison
  • David Durden - National Ecological Observatory Network
  • Natchaya Pingintha-Durden - National Ecological Observatory Network
  • Cove Sturtevant- National Ecological Observatory Network
  • Ke Xu - University of Wisconsin-Madison

If you have questions about the workshop materials, please contact one of the instructors.

| Time | Topic | Lead | |-------------|---------------| | 18:30 | Help desk and room set up| | | 19:00 | Welcome & Introductions| Stefan, Ankur | | 19:15 | Overview of eddy4R community software model| Stefan | | 19:30 | Lightning talks: community use and applications of interest| | | | NOX Fluxes | Adam R. Vaughan | | | Scaled End-to-end Data Processing | Tarek El-Madany | | | Insights from alternative flux processing approaches | Anne Griebel | | 20:15 | Break| | | 20:30 | Breakout Groups| | | | Tutorial: Interactive (basic) eddy4R| Dave, Natchaya | | | Discussion/brainstorming: Scaled, reproducible application of eddy4R| Cove, Ankur | | | Discussion/demo: Advanced processing capabilities of eddy4R| Ke, Stefan | | 21:15 | Breakout summary, next steps, and debrief | Ankur, Stefan |

Workshop Notes

[[nid:6577]]

Presentations

[[nid:6730]] [[nid:6582]] [[nid:6583]] [[nid:6584]]

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