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  1. Resources
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Code Hub

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NEON's data are often complex; working with data can be greatly simplified using software or code. We provide some code to get you started, like with our `neonUtilities` package for R, and also post links to code contributed by members of the community. The NEON-related code resources listed below are designed to make working with all NEON data easier, to perform common algorithms on select data products, and to share the code used to generate select  data products.

Most code resources that were created by and are managed by NEON can be found in the NEONScience GitHub organization. The code is free and open access to download and utilize. The code found in the NEONScience GitHub organization is published and maintained by NEON project scientists. 

Other code resources listed below are created by data users interested in sharing their code. If you have requests for coding resources, challenges with NEON data or ideas for creating NEON data-related code, we encourage you to learn more about how we categorize NEON-related code resources, and how you can submit your own code resources.

Code resources are provided at three tiers, differing in level of review by NEON:

Tier 1: Community Contributed Code Community contributed code is reviewed to determine that it is publicly available, generally comprehensible, and involves NEON data. Code functionality is not evaluated.
Tier 2: NEON Certified Code Certified code goes through a code review, to ensure it performs as described and without error.
Tier 3: NEON Production Code Production code is used in NEON data processing pipelines, to generate NEON data products. It is the end product of a very long and careful development process.

Search the table below to find code that might be useful for your project.

Language
    Title
  • Description
  • Tier
  • Language

Phenocam & Repeat Photography

The PhenoCam Network develops and hosts a variety of tools to work with phenocam and other repeat photography images. Tools have been developed in R, Python and interactive GUIs.

Tier 2: NEON certified code
More Details

The tools include: 

  • phenocamapi R package: Access and work with NEON phenocam data (phenology images,  DP1.00033.001; land-water interface images, DP1.20002.001; snow depth and understory phenology images, DP1.00042.001) from the Phenocam Network directly to your R workspace or computer.
  • xROI R package: Delineate Region of Interests (ROI's) and extract time series data from the image. 
  • phenocamr and phenor R packages: Provide phenology modelling tools. 
More Info
Data products:
DP1.00033.001 | Phenology images, DP1.00042.001 | Snow depth and understory phenology images, DP1.20002.001 | Land-water interface images
Tier:
Tier 2: NEON certified code
Contributor name:
Phenocam
License:
GNU Affero General Public v3.0
Related collection system:
AIS (Aquatic Instrument System), TIS (Terrestrial Instrument System)
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The National Ecological Observatory Network is a major facility fully funded by the National Science Foundation.

Any opinions, findings and conclusions or recommendations expressed in this material do not necessarily reflect the views of the National Science Foundation.